iSeq

DOI: 10.18129/B9.bioc.iSeq    

This is the development version of iSeq; for the stable release version, see iSeq.

Bayesian Hierarchical Modeling of ChIP-seq Data Through Hidden Ising Models

Bioconductor version: Development (3.9)

Bayesian hidden Ising models are implemented to identify IP-enriched genomic regions from ChIP-seq data. They can be used to analyze ChIP-seq data with and without controls and replicates.

Author: Qianxing Mo

Maintainer: Qianxing Mo <qianxing.mo at moffitt.org>

Citation (from within R, enter citation("iSeq")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("iSeq", version = "3.9")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("iSeq")

 

PDF R Script iSeq
PDF   Reference Manual
Text   NEWS

Details

biocViews ChIPSeq, Sequencing, Software
Version 1.35.0
In Bioconductor since BioC 2.7 (R-2.12) (8 years)
License GPL (>= 2)
Depends R (>= 2.10.0)
Imports
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Depends On Me
Imports Me
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Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package iSeq_1.35.0.tar.gz
Windows Binary iSeq_1.35.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) iSeq_1.35.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/iSeq
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/iSeq
Package Short Url http://bioconductor.org/packages/iSeq/
Package Downloads Report Download Stats

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