DOI: 10.18129/B9.bioc.genphen    

This is the development version of genphen; for the stable release version, see genphen.

A tool for quantification of associations between genotypes and phenotypes with Bayesian inference and statistical learning techniques

Bioconductor version: Development (3.9)

Genetic association studies are an essential tool for studying the relationship between genotypes and phenotypes. With genphen we can quantify the association between genotypes and phenotypes using a hybrid method which uses statistical learning techniques such as random forest and support vector machines, and Bayesian inference using hierarchical models.

Author: Simo Kitanovski

Maintainer: Simo Kitanovski <simo.kitanovski at>

Citation (from within R, enter citation("genphen")):


To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
BiocManager::install("genphen", version = "3.9")

For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



PDF R Script genphen overview
PDF   Reference Manual
Text   NEWS


biocViews Bayesian, Classification, FeatureExtraction, Genetics, GenomeWideAssociation, Regression, SequenceMatching, Sequencing, Software, SupportVectorMachine
Version 1.11.0
In Bioconductor since BioC 3.3 (R-3.3) (2.5 years)
License GPL (>= 2)
Depends R (>= 3.5), stats, graphics, e1071, Biostrings, rstan, ranger, parallel, foreach, doParallel
Depends On Me
Imports Me
Suggests Me
Links To Me
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Follow Installation instructions to use this package in your R session.

Source Package genphen_1.11.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan) genphen_1.11.0.tgz
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