To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("gcatest")

In most cases, you don't need to download the package archive at all.

gcatest

 

   

This is the development version of gcatest; for the stable release version, see gcatest.

Genotype Conditional Association TEST

Bioconductor version: Development (3.6)

GCAT is an association test for genome wide association studies that controls for population structure under a general class of trait. models.

Author: Wei Hao, Minsun Song, John D. Storey

Maintainer: Wei Hao <whao at princeton.edu>, John D. Storey <jstorey at princeton.edu>

Citation (from within R, enter citation("gcatest")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("gcatest")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("gcatest")

 

PDF R Script gcat Package
PDF   Reference Manual

Details

biocViews DimensionReduction, GenomeWideAssociation, PrincipalComponent, SNP, Software
Version 1.7.0
In Bioconductor since BioC 3.2 (R-3.2) (1.5 years)
License GPL-3
Depends R (>= 3.2)
Imports lfa
LinkingTo
Suggests knitr, ggplot2
SystemRequirements
Enhances
URL https://github.com/StoreyLab/gcatest
BugReports https://github.com/StoreyLab/gcatest/issues
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source gcatest_1.7.0.tar.gz
Windows Binary gcatest_1.7.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) gcatest_1.7.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/gcatest
Package Short Url http://bioconductor.org/packages/gcatest/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: