flowPeaks

DOI: 10.18129/B9.bioc.flowPeaks    

This is the development version of flowPeaks; for the stable release version, see flowPeaks.

An R package for flow data clustering

Bioconductor version: Development (3.8)

A fast and automatic clustering to classify the cells into subpopulations based on finding the peaks from the overall density function generated by K-means.

Author: Yongchao Ge<yongchao.ge at gmail.com>

Maintainer: Yongchao Ge<yongchao.ge at gmail.com>

Citation (from within R, enter citation("flowPeaks")):

Installation

To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly=TRUE))
    install.packages("BiocManager")
BiocManager::install("flowPeaks", version = "devel")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowPeaks")

 

PDF R Script Tutorial of flowPeaks package
PDF   Reference Manual
Text   README

Details

biocViews Clustering, FlowCytometry, Gating, Software
Version 1.27.0
In Bioconductor since BioC 2.11 (R-2.15) (6 years)
License Artistic-1.0
Depends R (>= 2.12.0)
Imports
LinkingTo
Suggests
SystemRequirements gsl
Enhances flowCore
URL
Depends On Me
Imports Me CONFESS, ddPCRclust
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package flowPeaks_1.27.0.tar.gz
Windows Binary flowPeaks_1.27.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) flowPeaks_1.27.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/flowPeaks
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/flowPeaks
Package Short Url http://bioconductor.org/packages/flowPeaks/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: