flowCore

DOI: 10.18129/B9.bioc.flowCore    

This is the development version of flowCore; for the stable release version, see flowCore.

flowCore: Basic structures for flow cytometry data

Bioconductor version: Development (3.8)

Provides S4 data structures and basic functions to deal with flow cytometry data.

Author: B. Ellis, P. Haaland, F. Hahne, N. Le Meur, N. Gopalakrishnan, J. Spidlen, M. Jiang, G. Finak

Maintainer: M.Jiang <wjiang2 at fhcrc.org>

Citation (from within R, enter citation("flowCore")):

Installation

To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly=TRUE))
    install.packages("BiocManager")
BiocManager::install("flowCore", version = "devel")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowCore")

 

PDF R Script Basic Functions for Flow Cytometry Data
HTML fcs3.html
HTML hyperlog.notice.html
PDF   Reference Manual
Text   NEWS

Details

biocViews CellBasedAssays, FlowCytometry, Infrastructure, Software
Version 1.47.4
In Bioconductor since BioC 2.0 (R-2.5) (11.5 years)
License Artistic-2.0
Depends R (>= 3.0.2)
Imports Biobase, BiocGenerics(>= 0.1.14), graph, grDevices, graphics, methods, rrcov, stats, utils, stats4, corpcor, Rcpp, matrixStats, MASS
LinkingTo Rcpp, BH (>= 1.65.0.1)
Suggests Rgraphviz, flowViz, flowStats, testthat, flowWorkspace, flowWorkspaceData, openCyto, knitr, ggcyto, gridExtra
SystemRequirements GNU make, C++11
Enhances
URL
Depends On Me flowBeads, flowBin, flowClean, flowFitExampleData, flowFP, flowMatch, flowStats, flowTime, flowTrans, flowViz, flowVS, flowWorkspace, ggcyto, HDCytoData, healthyFlowData, highthroughputassays, immunoClust, ncdfFlow, plateCore, QUALIFIER
Imports Me CATALYST, CONFESS, cydar, CytoDx, cytofkit, cytofWorkflow, CytoML, ddPCRclust, diffcyt, flowAI, flowBeads, flowCHIC, flowClust, flowDensity, flowFit, flowMeans, flowMerge, flowPloidy, flowQ, flowQB, FlowSOM, flowStats, flowTrans, flowType, flowUtils, flowViz, GateFinder, MetaCyto, ncdfFlow, oneSENSE, openCyto, plateCore, QUALIFIER, Sconify
Suggests Me COMPASS, flowPloidyData, FlowRepositoryR, RchyOptimyx
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package flowCore_1.47.4.tar.gz
Windows Binary flowCore_1.47.4.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) flowCore_1.47.4.tgz
Source Repository git clone https://git.bioconductor.org/packages/flowCore
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/flowCore
Package Short Url http://bioconductor.org/packages/flowCore/
Package Downloads Report Download Stats

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