fCI

DOI: 10.18129/B9.bioc.fCI    

This is the development version of fCI; for the stable release version, see fCI.

f-divergence Cutoff Index for Differential Expression Analysis in Transcriptomics and Proteomics

Bioconductor version: Development (3.9)

(f-divergence Cutoff Index), is to find DEGs in the transcriptomic & proteomic data, and identify DEGs by computing the difference between the distribution of fold-changes for the control-control and remaining (non-differential) case-control gene expression ratio data. fCI provides several advantages compared to existing methods.

Author: Shaojun Tang

Maintainer: Shaojun Tang <tangshao2008 at gmail.com>

Citation (from within R, enter citation("fCI")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("fCI", version = "3.9")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("fCI")

 

HTML R Script fCI
PDF   Reference Manual

Details

biocViews Proteomics, Software
Version 1.13.0
In Bioconductor since BioC 3.2 (R-3.2) (3 years)
License GPL (>= 2)
Depends R (>= 3.1), FNN, psych, gtools, zoo, rgl, grid, VennDiagram
Imports
LinkingTo
Suggests knitr, rmarkdown, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package fCI_1.13.0.tar.gz
Windows Binary fCI_1.13.0.zip
Mac OS X 10.11 (El Capitan) fCI_1.13.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/fCI
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/fCI
Package Short Url http://bioconductor.org/packages/fCI/
Package Downloads Report Download Stats

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