DOI: 10.18129/B9.bioc.fCI    

This is the development version of fCI; for the stable release version, see fCI.

f-divergence Cutoff Index for Differential Expression Analysis in Transcriptomics and Proteomics

Bioconductor version: Development (3.9)

(f-divergence Cutoff Index), is to find DEGs in the transcriptomic & proteomic data, and identify DEGs by computing the difference between the distribution of fold-changes for the control-control and remaining (non-differential) case-control gene expression ratio data. fCI provides several advantages compared to existing methods.

Author: Shaojun Tang

Maintainer: Shaojun Tang <tangshao2008 at gmail.com>

Citation (from within R, enter citation("fCI")):


To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
BiocManager::install("fCI", version = "3.9")

For older versions of R, please refer to the appropriate Bioconductor release.


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biocViews Proteomics, Software
Version 1.13.0
In Bioconductor since BioC 3.2 (R-3.2) (3 years)
License GPL (>= 2)
Depends R (>= 3.1), FNN, psych, gtools, zoo, rgl, grid, VennDiagram
Suggests knitr, rmarkdown, BiocStyle
Depends On Me
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Source Package fCI_1.13.0.tar.gz
Windows Binary fCI_1.13.0.zip
Mac OS X 10.11 (El Capitan) fCI_1.13.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/fCI
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/fCI
Package Short Url http://bioconductor.org/packages/fCI/
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