DOI: 10.18129/B9.bioc.epigenomix    

This is the development version of epigenomix; for the stable release version, see epigenomix.

Epigenetic and gene transcription data normalization and integration with mixture models

Bioconductor version: Development (3.8)

A package for the integrative analysis of RNA-seq or microarray based gene transcription and histone modification data obtained by ChIP-seq. The package provides methods for data preprocessing and matching as well as methods for fitting bayesian mixture models in order to detect genes with differences in both data types.

Author: Hans-Ulrich Klein, Martin Schaefer

Maintainer: Hans-Ulrich Klein <h.klein at uni-muenster.de>

Citation (from within R, enter citation("epigenomix")):


To install this package, start R and enter:

if (!require("BiocManager"))
BiocManager::install("epigenomix", version = "devel")


To view documentation for the version of this package installed in your system, start R and enter:



PDF R Script epigenomix package vignette
PDF   Reference Manual


biocViews ChIPSeq, Classification, DifferentialExpression, GeneExpression, Software
Version 1.21.0
In Bioconductor since BioC 2.12 (R-3.0) (5.5 years)
License LGPL-3
Depends R (>= 3.2.0), methods, Biobase, S4Vectors, IRanges, GenomicRanges, SummarizedExperiment
Imports BiocGenerics, MCMCpack, Rsamtools, parallel, GenomeInfoDb, beadarray
Depends On Me
Imports Me
Suggests Me
Build Report  

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Source Package epigenomix_1.21.0.tar.gz
Windows Binary epigenomix_1.21.0.zip
Mac OS X 10.11 (El Capitan) epigenomix_1.21.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/epigenomix
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/epigenomix
Package Short Url http://bioconductor.org/packages/epigenomix/
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