To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("eisa")

In most cases, you don't need to download the package archive at all.

eisa

DOI: 10.18129/B9.bioc.eisa    

This is the development version of eisa; for the stable release version, see eisa.

Expression data analysis via the Iterative Signature Algorithm

Bioconductor version: Development (3.7)

The Iterative Signature Algorithm (ISA) is a biclustering method; it finds correlated blocks (transcription modules) in gene expression (or other tabular) data. The ISA is capable of finding overlapping modules and it is resilient to noise. This package provides a convenient interface to the ISA, using standard BioConductor data structures; and also contains various visualization tools that can be used with other biclustering algorithms.

Author: Gabor Csardi <csardi.gabor at gmail.com>

Maintainer: Gabor Csardi <csardi.gabor at gmail.com>

Citation (from within R, enter citation("eisa")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("eisa")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("eisa")

 

PDF R Script The Iterative Signature Algorithm for Gene Expression Data
PDF   Reference Manual

Details

biocViews Classification, GeneExpression, Microarray, Software, Visualization
Version 1.31.0
In Bioconductor since BioC 2.6 (R-2.11) (7.5 years)
License GPL (>= 2)
Depends isa2, Biobase(>= 2.17.8), AnnotationDbi, methods
Imports BiocGenerics, Category, genefilter, DBI
LinkingTo
Suggests igraph (>= 0.6), Matrix, GOstats, GO.db, KEGG.db, biclust, MASS, xtable, ALL, hgu95av2.db, targetscan.Hs.eg.db, org.Hs.eg.db
SystemRequirements
Enhances
URL
Depends On Me ExpressionView
Imports Me ExpressionView
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package eisa_1.31.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan) eisa_1.31.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/eisa
Package Short Url http://bioconductor.org/packages/eisa/
Package Downloads Report Download Stats

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