dupRadar

DOI: 10.18129/B9.bioc.dupRadar    

This is the development version of dupRadar; for the stable release version, see dupRadar.

Assessment of duplication rates in RNA-Seq datasets

Bioconductor version: Development (3.8)

Duplication rate quality control for RNA-Seq datasets.

Author: Sergi Sayols <sergisayolspuig at gmail.com>, Holger Klein <holger.klein at gmail.com>

Maintainer: Sergi Sayols <sergisayolspuig at gmail.com>, Holger Klein <holger.klein at gmail.com>

Citation (from within R, enter citation("dupRadar")):

Installation

To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("dupRadar", version = "devel")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("dupRadar")

 

HTML R Script Using dupRadar
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews QualityControl, RNASeq, Sequencing, Software, Technology
Version 1.11.1
In Bioconductor since BioC 3.2 (R-3.2) (3 years)
License GPL-3
Depends R (>= 3.2.0)
Imports Rsubread(>= 1.14.1)
LinkingTo
Suggests BiocStyle, knitr, rmarkdown, AnnotationHub
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package dupRadar_1.11.1.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan) dupRadar_1.11.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/dupRadar
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/dupRadar
Package Short Url http://bioconductor.org/packages/dupRadar/
Package Downloads Report Download Stats

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