destiny

DOI: 10.18129/B9.bioc.destiny    

This is the development version of destiny; for the stable release version, see destiny.

Creates diffusion maps

Bioconductor version: Development (3.8)

Create and plot diffusion maps.

Author: Philipp Angerer [cre, aut], Laleh Haghverdi [ctb], Maren Büttner [ctb], Fabian Theis [ctb], Carsten Marr [ctb], Florian Büttner [ctb]

Maintainer: Philipp Angerer <philipp.angerer at helmholtz-muenchen.de>

Citation (from within R, enter citation("destiny")):

Installation

To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("destiny", version = "devel")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("destiny")

 

PDF Diffusion-Map-recap.pdf
PDF Diffusion-Maps.pdf
PDF DPT.pdf
PDF Global-Sigma.pdf
PDF tidyverse.pdf
PDF   Reference Manual
Text   NEWS

Details

biocViews CellBasedAssays, CellBiology, Clustering, Software, Visualization
Version 2.11.3
In Bioconductor since BioC 3.2 (R-3.2) (3 years)
License GPL
Depends R (>= 3.3.0)
Imports methods, graphics, grDevices, utils, stats, Matrix, Rcpp (>= 0.10.3), RcppEigen, Biobase, BiocGenerics, SummarizedExperiment, ggplot2, ggthemes, VIM, proxy, igraph, smoother, scales, scatterplot3d
LinkingTo Rcpp, RcppEigen, grDevices
Suggests nbconvertR, testthat, FNN, tidyr, SingleCellExperiment
SystemRequirements C++11
Enhances rgl, SingleCellExperiment
URL https://github.com/theislab/destiny
BugReports https://github.com/theislab/destiny/issues
Depends On Me simpleSingleCell
Imports Me cytofkit
Suggests Me CellTrails, monocle, scater, slingshot
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package destiny_2.11.3.tar.gz
Windows Binary destiny_2.11.3.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) destiny_2.11.3.tgz
Source Repository git clone https://git.bioconductor.org/packages/destiny
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/destiny
Package Short Url http://bioconductor.org/packages/destiny/
Package Downloads Report Download Stats

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