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This is the development version of derfinder; for the stable release version, see derfinder.
Bioconductor version: Development (3.7)
This package provides functions for annotation-agnostic differential expression analysis of RNA-seq data. Two implementations of the DER Finder approach are included in this package: (1) single base-level F-statistics and (2) DER identification at the expressed regions-level. The DER Finder approach can also be used to identify differentially bounded ChIP-seq peaks.
Author: Leonardo Collado-Torres [aut, cre], Alyssa C. Frazee [ctb], Andrew E. Jaffe [aut], Jeffrey T. Leek [aut, ths]
Maintainer: Leonardo Collado-Torres <lcollado at jhu.edu>
Citation (from within R,
enter citation("derfinder")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("http://bioc.ism.ac.jp/biocLite.R") biocLite("derfinder")
HTML | R Script | derfinder quick start guide |
HTML | R Script | derfinder users guide |
Reference Manual | ||
Text | NEWS |
Follow Installation instructions to use this package in your R session.
Source Package | derfinder_1.13.8.tar.gz |
Windows Binary | derfinder_1.13.8.zip |
Mac OS X 10.11 (El Capitan) | derfinder_1.13.8.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/derfinder |
Package Short Url | http://bioconductor.org/packages/derfinder/ |
Package Downloads Report | Download Stats |
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