To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("dSimer")

In most cases, you don't need to download the package archive at all.

dSimer

 

This is the development version of dSimer; for the stable release version, see dSimer.

Integration of Disease Similarity Methods

Bioconductor version: Development (3.6)

dSimer is an R package which provides computation of nine methods for measuring disease-disease similarity, including a standard cosine similarity measure and eight function-based methods. The disease similarity matrix obtained from these nine methods can be visualized through heatmap and network. Biological data widely used in disease-disease associations study are also provided by dSimer.

Author: Min Li <limin at mail.csu.edu.cn>, Peng Ni <nipeng at csu.edu.cn> with contributions from Zhihui Fei and Ping Huang.

Maintainer: Peng Ni <nipeng at csu.edu.cn>

Citation (from within R, enter citation("dSimer")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("dSimer")

Documentation

HTML R Script Integration of Disease Similarity Methods
PDF   Reference Manual
Text   NEWS

Details

biocViews Network, Software, Visualization
Version 1.3.0
In Bioconductor since BioC 3.4 (R-3.3) (1 year)
License GPL (>= 2)
Depends R (>= 3.3.0), igraph (>= 1.0.1)
Imports stats, Rcpp (>= 0.11.3), ggplot2, reshape2, GO.db, org.Hs.eg.db, AnnotationDbi, graphics
LinkingTo Rcpp
Suggests knitr, rmarkdown, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source dSimer_1.3.0.tar.gz
Windows Binary dSimer_1.3.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) dSimer_1.3.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/dSimer
Package Short Url http://bioconductor.org/packages/dSimer/
Package Downloads Report Download Stats

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