To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("clusterExperiment")

In most cases, you don't need to download the package archive at all.

clusterExperiment

DOI: 10.18129/B9.bioc.clusterExperiment    

This is the development version of clusterExperiment; for the stable release version, see clusterExperiment.

Compare Clusterings for Single-Cell Sequencing

Bioconductor version: Development (3.6)

Provides functionality for running and comparing many different clusterings of single-cell sequencing data or other large mRNA Expression data sets.

Author: Elizabeth Purdom [aut, cre, cph], Davide Risso [aut], Marla Johnson [ctb]

Maintainer: Elizabeth Purdom <epurdom at stat.berkeley.edu>

Citation (from within R, enter citation("clusterExperiment")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("clusterExperiment")

Documentation

HTML R Script clusterExperiment Vignette
PDF   Reference Manual
Text   NEWS

Details

biocViews Clustering, RNASeq, Sequencing, SingleCell, Software
Version 1.3.4
In Bioconductor since BioC 3.4 (R-3.3) (1 year)
License Artistic-2.0
Depends R (>= 3.3), SummarizedExperiment
Imports methods, NMF, RColorBrewer, ape, phylobase, cluster, stats, limma, dendextend, howmany, locfdr, matrixStats, graphics, parallel, RSpectra, kernlab
LinkingTo
Suggests BiocStyle, knitr, testthat, scRNAseq, MAST
SystemRequirements
Enhances
URL
BugReports https://github.com/epurdom/clusterExperiment/issues
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package clusterExperiment_1.3.4.tar.gz
Windows Binary clusterExperiment_1.3.4.zip
Mac OS X 10.11 (El Capitan) clusterExperiment_1.3.4.tgz
Source Repository git clone https://git.bioconductor.org/packages/clusterExperiment
Package Short Url http://bioconductor.org/packages/clusterExperiment/
Package Downloads Report Download Stats

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