To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("chromDraw")

In most cases, you don't need to download the package archive at all.

chromDraw

DOI: 10.18129/B9.bioc.chromDraw    

This is the development version of chromDraw; for the stable release version, see chromDraw.

chromDraw is a R package for drawing the schemes of karyotypes in the linear and circular fashion.

Bioconductor version: Development (3.6)

ChromDraw is a R package for drawing the schemes of karyotype(s) in the linear and circular fashion. It is possible to visualized cytogenetic marsk on the chromosomes. This tool has own input data format. Input data can be imported from the GenomicRanges data structure. This package can visualized the data in the BED file format. Here is requirement on to the first nine fields of the BED format. Output files format are *.eps and *.svg.

Author: Jan Janecka, Ing., Mgr. CEITEC Masaryk University

Maintainer: Jan Janecka <jan.janecka at ceitec.muni.cz>

Citation (from within R, enter citation("chromDraw")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("chromDraw")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("chromDraw")

 

PDF R Script chromDraw
PDF   Reference Manual
Text   NEWS

Details

biocViews Software
Version 2.7.0
In Bioconductor since BioC 3.1 (R-3.2) (2.5 years)
License GPL-3
Depends R (>= 3.0.0)
Imports Rcpp (>= 0.11.1), GenomicRanges(>= 1.17.46)
LinkingTo Rcpp
Suggests
SystemRequirements Rtools (>= 3.1)
Enhances
URL www.plantcytogenomics.org/chromDraw
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package chromDraw_2.7.0.tar.gz
Windows Binary chromDraw_2.7.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) chromDraw_2.7.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/chromDraw
Package Short Url http://bioconductor.org/packages/chromDraw/
Package Downloads Report Download Stats

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