DOI: 10.18129/B9.bioc.chroGPS    

This is the development version of chroGPS; for the stable release version, see chroGPS.

Visualizing the epigenome

Bioconductor version: Development (3.8)

We provide intuitive maps to visualize the association between genetic elements, with emphasis on epigenetics. The approach is based on Multi-Dimensional Scaling. We provide several sensible distance metrics, and adjustment procedures to remove systematic biases typically observed when merging data obtained under different technologies or genetic backgrounds.

Author: Oscar Reina, David Rossell

Maintainer: Oscar Reina <oscar.reina at>

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PDF R Script Manual for the chroGPS library
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biocViews Clustering, Software, Visualization
Version 1.29.0
In Bioconductor since BioC 2.11 (R-2.15) (5.5 years)
License GPL (>=2.14)
Depends R (>= 3.1.0), GenomicRanges, methods, Biobase, MASS, graphics, stats, changepoint
Imports cluster, DPpackage, ICSNP
Enhances parallel, XML, rgl
Depends On Me
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