To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("cbaf")

In most cases, you don't need to download the package archive at all.

cbaf

DOI: 10.18129/B9.bioc.cbaf    

This is the development version of cbaf; to use it, please install the devel version of Bioconductor.

Multiple automated functions for cbioportal.org.

Bioconductor version: Development (3.6)

This package contains functions that allow analysing and comparing various gene groups from different cancers/cancer subgroups easily. So far, it is compatible with RNA-seq, microRNA-seq, microarray and methylation datasets that are stored on cbioportal.org.

Author: Arman Shahrisa [aut, cre, cph], Maryam Tahmasebi Birgani [aut]

Maintainer: Arman Shahrisa <shahrisa.arman at hotmail.com>

Citation (from within R, enter citation("cbaf")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("cbaf")

Documentation

HTML R Script cbaf
PDF   Reference Manual
Text   NEWS

Details

biocViews Software, Technology
Version 0.99.8
License Artistic-2.0
Depends
Imports BiocFileCache, RColorBrewer, cgdsr, genefilter, gplots, grDevices, stats, utils, xlsx
LinkingTo
Suggests knitr, rmarkdown, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package cbaf_0.99.8.tar.gz
Windows Binary cbaf_0.99.8.zip
Mac OS X 10.11 (El Capitan) cbaf_0.99.8.tgz
Source Repository git clone https://git.bioconductor.org/packages/cbaf
Package Short Url http://bioconductor.org/packages/cbaf/
Package Downloads Report Download Stats

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