To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("canceR")

In most cases, you don't need to download the package archive at all.

canceR

 

This is the development version of canceR; for the stable release version, see canceR.

A Graphical User Interface for accessing and modeling the Cancer Genomics Data of MSKCC.

Bioconductor version: Development (3.6)

The package is user friendly interface based on the cgdsr and other modeling packages to explore, compare, and analyse all available Cancer Data (Clinical data, Gene Mutation, Gene Methylation, Gene Expression, Protein Phosphorylation, Copy Number Alteration) hosted by the Computational Biology Center at Memorial-Sloan-Kettering Cancer Center (MSKCC).

Author: Karim Mezhoud. Nuclear Safety & Security Department. Nuclear Science Center of Tunisia.

Maintainer: Karim Mezhoud <kmezhoud at gmail.com>

Citation (from within R, enter citation("canceR")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("canceR")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("canceR")

 

PDF canceR Vignette
PDF   Reference Manual
Text   NEWS

Details

biocViews GUI, GeneExpression, Software
Version 1.9.0
In Bioconductor since BioC 3.1 (R-3.2) (2.5 years)
License GPL-2
Depends R (>= 3.3), tcltk, tcltk2, cgdsr
Imports GSEABase, GSEAlm, tkrplot, geNetClassifier, RUnit, Formula, rpart, survival, Biobase, phenoTest, circlize, plyr, graphics, stats, utils
LinkingTo
Suggests testthat (>= 0.10.0), R.rsp
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source canceR_1.9.0.tar.gz
Windows Binary canceR_1.9.0.zip
Mac OS X 10.11 (El Capitan) canceR_1.9.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/canceR
Package Short Url http://bioconductor.org/packages/canceR/
Package Downloads Report Download Stats

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