To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("bsseq")

In most cases, you don't need to download the package archive at all.

bsseq

DOI: 10.18129/B9.bioc.bsseq    

This is the development version of bsseq; for the stable release version, see bsseq.

Analyze, manage and store bisulfite sequencing data

Bioconductor version: Development (3.6)

A collection of tools for analyzing and visualizing bisulfite sequencing data.

Author: Kasper Daniel Hansen [aut, cre], Peter Hickey [aut]

Maintainer: Kasper Daniel Hansen <kasperdanielhansen at gmail.com>

Citation (from within R, enter citation("bsseq")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("bsseq")

Documentation

HTML R Script Analyzing WGBS data with bsseq
HTML R Script bsseq User's Guide
PDF   Reference Manual
Text   NEWS

Details

biocViews DNAMethylation, Software
Version 1.13.9
In Bioconductor since BioC 2.11 (R-2.15) (5 years)
License Artistic-2.0
Depends R (>= 3.3), methods, BiocGenerics, GenomicRanges(>= 1.29.14), SummarizedExperiment(>= 1.7.8), parallel
Imports IRanges(>= 2.11.16), GenomeInfoDb, scales, stats, graphics, Biobase, locfit, gtools, data.table, S4Vectors, R.utils (>= 2.0.0), matrixStats (>= 0.50.0), permute, limma, DelayedArray, HDF5Array
LinkingTo
Suggests RUnit, bsseqData, BiocStyle, rmarkdown, knitr
SystemRequirements
Enhances
URL https://github.com/kasperdanielhansen/bsseq
BugReports https://github.com/kasperdanielhansen/bsseq/issues
Depends On Me bsseqData, DSS
Imports Me MIRA
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package bsseq_1.13.9.tar.gz
Windows Binary bsseq_1.13.9.zip
Mac OS X 10.11 (El Capitan) bsseq_1.13.9.tgz
Source Repository git clone https://git.bioconductor.org/packages/bsseq
Package Short Url http://bioconductor.org/packages/bsseq/
Package Downloads Report Download Stats

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