bnbc

DOI: 10.18129/B9.bioc.bnbc    

This is the development version of bnbc; for the stable release version, see bnbc.

Bandwise normalization and batch correction of Hi-C data

Bioconductor version: Development (3.8)

Tools to normalize (several) Hi-C data from replicates.

Author: Kipper Fletez-Brant [cre, aut], Kasper Daniel Hansen [aut]

Maintainer: Kipper Fletez-Brant <cafletezbrant at gmail.com>

Citation (from within R, enter citation("bnbc")):

Installation

To install this package, start R and enter:

if (!require("BiocManager"))
    install.packages("BiocManager")
BiocManager::install("bnbc", version = "devel")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("bnbc")

 

HTML R Script bnbc User's Guide
PDF   Reference Manual
Text   NEWS

Details

biocViews HiC, Normalization, Preprocessing, Software
Version 1.3.0
License Artistic-2.0
Depends R (>= 3.4.0), methods, BiocGenerics, SummarizedExperiment, GenomicRanges
Imports Rcpp (>= 0.12.12), IRanges, GenomeInfoDb, S4Vectors, matrixStats, preprocessCore, sva, parallel, EBImage, utils
LinkingTo Rcpp
Suggests BiocStyle, knitr, rmarkdown, RUnit
SystemRequirements
Enhances
URL https://github.com/hansenlab/bnbc
BugReports https://github.com/hansenlab/bnbc/issues
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package bnbc_1.3.0.tar.gz
Windows Binary bnbc_1.3.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) bnbc_1.3.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/bnbc
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/bnbc
Package Short Url http://bioconductor.org/packages/bnbc/
Package Downloads Report Download Stats

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