To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("bioCancer")

In most cases, you don't need to download the package archive at all.

bioCancer

DOI: 10.18129/B9.bioc.bioCancer    

This is the development version of bioCancer; for the stable release version, see bioCancer.

Interactive Multi-Omics Cancers Data Visualization and Analysis

Bioconductor version: Development (3.7)

bioCancer is a Shiny App to visualize and analyse interactively Multi-Assays of Cancer Genomic Data.

Author: Karim Mezhoud [aut, cre]

Maintainer: Karim Mezhoud <kmezhoud at gmail.com>

Citation (from within R, enter citation("bioCancer")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("bioCancer")

Documentation

HTML R Script bioCancer: Interactive Multi-OMICS Cancers Data Visualization and Analysis
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews DataRepresentation, GUI, GeneExpression, GeneTarget, MultipleComparison, Network, Pathways, Reactome, Software, Visualization
Version 1.7.04
In Bioconductor since BioC 3.4 (R-3.3) (1 year)
License AGPL-3 | file LICENSE
Depends R (>= 3.3.0), radiant.data (>= 0.8.1), cgdsr (>= 1.2.6), XML (>= 3.98)
Imports DT (>= 0.2), dplyr (>= 0.7.2), shiny (>= 1.0.5), AlgDesign (>= 1.1.7.3), import (>= 1.1.0), methods, shinythemes, Biobase, geNetClassifier, AnnotationFuncs, org.Hs.eg.db, DOSE, clusterProfiler, reactome.db, ReactomePA, DiagrammeR (>= 0.7), visNetwork, htmlwidgets, plyr, tibble
LinkingTo
Suggests BiocStyle, rmarkdown, knitr, testthat (>= 0.10.0)
SystemRequirements
Enhances
URL http://kmezhoud.github.io/bioCancer
BugReports https://github.com/kmezhoud/bioCancer/issues
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package bioCancer_1.7.04.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan) bioCancer_1.7.04.tgz
Source Repository git clone https://git.bioconductor.org/packages/bioCancer
Package Short Url http://bioconductor.org/packages/bioCancer/
Package Downloads Report Download Stats

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