DOI: 10.18129/B9.bioc.beachmat    

This is the development version of beachmat; for the stable release version, see beachmat.

Compiling Bioconductor to Handle Each Matrix Type

Bioconductor version: Development (3.7)

Provides a consistent C++ class interface for a variety of commonly used matrix types, including sparse and HDF5-backed matrices.

Author: Aaron Lun [aut, cre], Herve Pages [aut], Mike Smith [aut]

Maintainer: Aaron Lun <alun at>

Citation (from within R, enter citation("beachmat")):


To install this package, start R and enter:

## try http:// if https:// URLs are not supported


HTML R Script Linking to beachmat with C++ code from another package
HTML R Script Using beachmat to read data from R matrices in C++
HTML R Script Using beachmat to write data into R matrix objects
HTML R Script Using beachmat's helper functions in R
PDF   Reference Manual
Text   NEWS


biocViews DataImport, DataRepresentation, Infrastructure, Software
Version 1.1.16
License GPL-3
Depends R (>= 3.5)
Imports utils, methods, Rhdf5lib(>= 1.1.4), rhdf5, HDF5Array(>= 1.7.3), DelayedArray(>= 0.5.30), Rcpp (>= 0.12.14)
LinkingTo Rcpp, Rhdf5lib
Suggests testthat, BiocStyle, knitr, rmarkdown, Matrix, devtools
SystemRequirements C++11
Depends On Me
Imports Me
Suggests Me DropletUtils, scater, scran
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Source Package beachmat_1.1.16.tar.gz
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Mac OS X 10.11 (El Capitan) beachmat_1.1.16.tgz
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