Wrench

DOI: 10.18129/B9.bioc.Wrench    

This is the development version of Wrench; for the stable release version, see Wrench.

Wrench normalization for sparse count data

Bioconductor version: Development (3.9)

Wrench is a package for normalization sparse genomic count data, like that arising from 16s metagenomic surveys.

Author: Senthil Kumar Muthiah [aut], Hector Corrada Bravo [aut, cre]

Maintainer: Hector Corrada Bravo <hcorrada at gmail.com>

Citation (from within R, enter citation("Wrench")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("Wrench", version = "3.9")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Wrench")

 

HTML R Script Wrench
PDF   Reference Manual

Details

biocViews Normalization, Sequencing, Software
Version 1.1.0
License Artistic-2.0
Depends R (>= 3.5.0)
Imports limma, matrixStats, locfit, stats, graphics
LinkingTo
Suggests knitr, rmarkdown, metagenomeSeq, DESeq2, edgeR
SystemRequirements
Enhances
URL https://github.com/HCBravoLab/Wrench
BugReports https://github.com/HCBravoLab/Wrench/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Wrench_1.1.0.tar.gz
Windows Binary Wrench_1.1.0.zip
Mac OS X 10.11 (El Capitan) Wrench_1.1.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/Wrench
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Wrench
Package Short Url http://bioconductor.org/packages/Wrench/
Package Downloads Report Download Stats

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