TTMap

DOI: 10.18129/B9.bioc.TTMap    

This is the development version of TTMap; for the stable release version, see TTMap.

Two-Tier Mapper: a clustering tool based on topological data analysis

Bioconductor version: Development (3.9)

TTMap is a clustering method that groups together samples with the same deviation in comparison to a control group. It is specially useful when the data is small. It is parameter free.

Author: Rachel Jeitziner

Maintainer: Rachel Jeitziner <rachel.jeitziner at epfl.ch>

Citation (from within R, enter citation("TTMap")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("TTMap", version = "3.9")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TTMap")

 

PDF R Script Manual for the TTMap library
PDF   Reference Manual

Details

biocViews Classification, Clustering, DifferentialExpression, Microarray, MultipleComparison, Software
Version 1.5.0
License GPL-2
Depends rgl, colorRamps
Imports grDevices, graphics, stats, utils, methods, SummarizedExperiment, Biobase
LinkingTo
Suggests BiocStyle, airway
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TTMap_1.5.0.tar.gz
Windows Binary TTMap_1.5.0.zip
Mac OS X 10.11 (El Capitan) TTMap_1.5.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/TTMap
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TTMap
Package Short Url http://bioconductor.org/packages/TTMap/
Package Downloads Report Download Stats

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