TDARACNE

DOI: 10.18129/B9.bioc.TDARACNE    

This is the development version of TDARACNE; for the stable release version, see TDARACNE.

Network reverse engineering from time course data.

Bioconductor version: Development (3.9)

To infer gene networks from time-series measurements is a current challenge into bioinformatics research area. In order to detect dependencies between genes at different time delays, we propose an approach to infer gene regulatory networks from time-series measurements starting from a well known algorithm based on information theory. The proposed algorithm is expected to be useful in reconstruction of small biological directed networks from time course data.

Author: Zoppoli P.,Morganella S., Ceccarelli M.

Maintainer: Zoppoli Pietro <zoppoli.pietro at gmail.com>

Citation (from within R, enter citation("TDARACNE")):

Installation

To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("TDARACNE", version = "3.9")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TDARACNE")

 

PDF R Script TDARACNE
PDF   Reference Manual

Details

biocViews Microarray, Software, TimeCourse
Version 1.33.0
In Bioconductor since BioC 2.8 (R-2.13) (7.5 years)
License GPL-2
Depends GenKern, Rgraphviz, Biobase
Imports
LinkingTo
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URL
Depends On Me
Imports Me
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Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TDARACNE_1.33.0.tar.gz
Windows Binary TDARACNE_1.33.0.zip
Mac OS X 10.11 (El Capitan) TDARACNE_1.33.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/TDARACNE
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TDARACNE
Package Short Url http://bioconductor.org/packages/TDARACNE/
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