RnaSeqSampleSize

DOI: 10.18129/B9.bioc.RnaSeqSampleSize    

This is the development version of RnaSeqSampleSize; for the stable release version, see RnaSeqSampleSize.

RnaSeqSampleSize

Bioconductor version: Development (3.9)

RnaSeqSampleSize package provides a sample size calculation method based on negative binomial model and the exact test for assessing differential expression analysis of RNA-seq data

Author: Shilin Zhao, Chung-I Li, Yan Guo, Quanhu Sheng, Yu Shyr

Maintainer: Shilin Zhao <zhaoshilin at gmail.com>

Citation (from within R, enter citation("RnaSeqSampleSize")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("RnaSeqSampleSize", version = "3.9")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RnaSeqSampleSize")

 

PDF R Script RnaSeqSampleSize: Sample size estimation by real data
PDF   Reference Manual
Text   NEWS

Details

biocViews DifferentialExpression, ExperimentalDesign, GeneExpression, RNASeq, Sequencing, Software
Version 1.15.1
In Bioconductor since BioC 3.1 (R-3.2) (3.5 years)
License GPL (>= 2)
Depends R (>= 2.10), RnaSeqSampleSizeData
Imports biomaRt, edgeR, heatmap3, matlab, KEGGREST, Rcpp (>= 0.11.2)
LinkingTo Rcpp
Suggests BiocStyle, knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RnaSeqSampleSize_1.15.1.tar.gz
Windows Binary RnaSeqSampleSize_1.15.1.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) RnaSeqSampleSize_1.15.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/RnaSeqSampleSize
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RnaSeqSampleSize
Package Short Url http://bioconductor.org/packages/RnaSeqSampleSize/
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