DOI: 10.18129/B9.bioc.Repitools    

This is the development version of Repitools; for the stable release version, see Repitools.

Epigenomic tools

Bioconductor version: Development (3.8)

Tools for the analysis of enrichment-based epigenomic data. Features include summarization and visualization of epigenomic data across promoters according to gene expression context, finding regions of differential methylation/binding, BayMeth for quantifying methylation etc.

Author: Mark Robinson <mark.robinson at>, Dario Strbenac <dario.strbenac at>, Aaron Statham <a.statham at>, Andrea Riebler <andrea.riebler at>

Maintainer: Mark Robinson <mark.robinson at>

Citation (from within R, enter citation("Repitools")):


To install this package, start R and enter:

## try http:// if https:// URLs are not supported


To view documentation for the version of this package installed in your system, start R and enter:



PDF R Script Using Repitools for Epigenomic Sequencing Data
PDF   Reference Manual


biocViews DNAMethylation, GeneExpression, MethylSeq, Software
Version 1.27.0
In Bioconductor since BioC 2.9 (R-2.14) (6.5 years)
License LGPL (>= 2)
Depends R (>= 3.0.0), methods, BiocGenerics(>= 0.8.0)
Imports parallel, S4Vectors(>= 0.17.25), IRanges(>= 2.13.12), GenomeInfoDb, GenomicRanges, Biostrings, Rsamtools, GenomicAlignments, rtracklayer, BSgenome(>= 1.47.3), gplots, grid, MASS, gsmoothr, edgeR(>= 3.4.0), DNAcopy, Ringo, aroma.affymetrix, Rsolnp, cluster
Suggests ShortRead, BSgenome.Hsapiens.UCSC.hg18
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Repitools_1.27.0.tar.gz
Windows Binary (32- & 64-bit)
Mac OS X 10.11 (El Capitan) Repitools_1.27.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
Package Short Url
Package Downloads Report Download Stats

Documentation »


R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: