Polyfit

DOI: 10.18129/B9.bioc.Polyfit    

This is the development version of Polyfit; for the stable release version, see Polyfit.

Add-on to DESeq to improve p-values and q-values

Bioconductor version: Development (3.8)

Polyfit is an add-on to the packages DESeq which ensures the p-value distribution is uniform over the interval [0, 1] for data satisfying the null hypothesis of no differential expression, and uses an adpated Storey-Tibshiran method to calculate q-values.

Author: Conrad Burden

Maintainer: Conrad Burden <conrad.burden at anu.edu.au>

Citation (from within R, enter citation("Polyfit")):

Installation

To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("Polyfit", version = "devel")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Polyfit")

 

PDF R Script Polyfit
PDF   Reference Manual

Details

biocViews DifferentialExpression, GeneExpression, RNASeq, Sequencing, Software
Version 1.15.0
In Bioconductor since BioC 3.0 (R-3.1) (4 years)
License GPL (>= 3)
Depends DESeq
Imports
LinkingTo
Suggests BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Polyfit_1.15.0.tar.gz
Windows Binary Polyfit_1.15.0.zip
Mac OS X 10.11 (El Capitan) Polyfit_1.15.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/Polyfit
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Polyfit
Package Short Url http://bioconductor.org/packages/Polyfit/
Package Downloads Report Download Stats

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