NTW

DOI: 10.18129/B9.bioc.NTW    

This is the development version of NTW; for the stable release version, see NTW.

Predict gene network using an Ordinary Differential Equation (ODE) based method

Bioconductor version: Development (3.9)

This package predicts the gene-gene interaction network and identifies the direct transcriptional targets of the perturbation using an ODE (Ordinary Differential Equation) based method.

Author: Wei Xiao, Yin Jin, Darong Lai, Xinyi Yang, Yuanhua Liu, Christine Nardini

Maintainer: Yuanhua Liu <liuyuanhua at picb.ac.cn>

Citation (from within R, enter citation("NTW")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("NTW", version = "3.9")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("NTW")

 

PDF R Script NTW vignette
PDF   Reference Manual
Text   NEWS

Details

biocViews Preprocessing, Software
Version 1.33.0
In Bioconductor since BioC 2.7 (R-2.12) (8 years)
License GPL-2
Depends R (>= 2.3.0)
Imports mvtnorm, stats, utils
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
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Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package NTW_1.33.0.tar.gz
Windows Binary NTW_1.33.0.zip
Mac OS X 10.11 (El Capitan) NTW_1.33.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/NTW
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/NTW
Package Short Url http://bioconductor.org/packages/NTW/
Package Downloads Report Download Stats

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