MSGFgui

DOI: 10.18129/B9.bioc.MSGFgui    

This is the development version of MSGFgui; for the stable release version, see MSGFgui.

A shiny GUI for MSGFplus

Bioconductor version: Development (3.9)

This package makes it possible to perform analyses using the MSGFplus package in a GUI environment. Furthermore it enables the user to investigate the results using interactive plots, summary statistics and filtering. Lastly it exposes the current results to another R session so the user can seamlessly integrate the gui into other workflows.

Author: Thomas Lin Pedersen

Maintainer: Thomas Lin Pedersen <thomasp85 at gmail.com>

Citation (from within R, enter citation("MSGFgui")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("MSGFgui", version = "3.9")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MSGFgui")

 

HTML R Script Using MSGFgui
PDF   Reference Manual
Text   NEWS

Details

biocViews GUI, MassSpectrometry, Proteomics, Software, Visualization
Version 1.17.0
In Bioconductor since BioC 3.0 (R-3.1) (4 years)
License GPL (>= 2)
Depends mzR, xlsx
Imports shiny, mzID(>= 1.2), MSGFplus, shinyFiles (>= 0.4.0), tools
LinkingTo
Suggests knitr, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MSGFgui_1.17.0.tar.gz
Windows Binary MSGFgui_1.17.0.zip
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/MSGFgui
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MSGFgui
Package Short Url http://bioconductor.org/packages/MSGFgui/
Package Downloads Report Download Stats

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