DOI: 10.18129/B9.bioc.HDF5Array    

This is the development version of HDF5Array; for the stable release version, see HDF5Array.

HDF5 back end for DelayedArray objects

Bioconductor version: Development (3.8)

An array-like container for convenient access and manipulation of HDF5 datasets. Supports delayed operations and block processing.

Author: Hervé Pagès

Maintainer: Hervé Pagès <hpages at fredhutch.org>

Citation (from within R, enter citation("HDF5Array")):


To install this package, start R and enter:

if (!require("BiocManager"))
BiocManager::install("HDF5Array", version = "devel")


PDF   Reference Manual


biocViews Annotation, Coverage, DataRepresentation, GenomeAnnotation, Infrastructure, Sequencing, Software
Version 1.9.5
In Bioconductor since BioC 3.3 (R-3.3) (2 years)
License Artistic-2.0
Depends R (>= 3.4), methods, DelayedArray(>= 0.7.17), rhdf5
Imports utils, tools, BiocGenerics(>= 0.25.1), S4Vectors, IRanges
Suggests h5vcData, SummarizedExperiment(>= 1.9.6), GenomicRanges, BiocStyle
Depends On Me BiocSklearn, TENxBrainData
Imports Me beachmat, bsseq, clusterExperiment, minfi, scmeth
Suggests Me DelayedArray, DelayedMatrixStats, DropletUtils, MultiAssayExperiment, scran, SummarizedExperiment
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package HDF5Array_1.9.5.tar.gz
Windows Binary HDF5Array_1.9.5.zip
Mac OS X 10.11 (El Capitan) HDF5Array_1.9.5.tgz
Source Repository git clone https://git.bioconductor.org/packages/HDF5Array
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/HDF5Array
Package Short Url http://bioconductor.org/packages/HDF5Array/
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