DOI: 10.18129/B9.bioc.GenomicInteractions    

This is the development version of GenomicInteractions; for the stable release version, see GenomicInteractions.

R package for handling genomic interaction data

Bioconductor version: Development (3.8)

R package for handling Genomic interaction data, such as ChIA-PET/Hi-C, annotating genomic features with interaction information and producing various plots / statistics.

Author: Harmston, N., Ing-Simmons, E., Perry, M., Baresic, A., Lenhard, B.

Maintainer: Liz Ing-Simmons <liz.ingsimmons at>

Citation (from within R, enter citation("GenomicInteractions")):


To install this package, start R and enter:

if (!require("BiocManager"))
BiocManager::install("GenomicInteractions", version = "devel")


To view documentation for the version of this package installed in your system, start R and enter:



HTML R Script chiapet_vignette.html
HTML R Script GenomicInteractions-HiC
PDF   Reference Manual
Text   NEWS


biocViews DataImport, DataRepresentation, HiC, Infrastructure, Software
Version 1.15.0
In Bioconductor since BioC 3.0 (R-3.1) (4 years)
License GPL-3
Depends R (>= 3.5), InteractionSet
Imports Rsamtools, rtracklayer, GenomicRanges(>= 1.29.6), IRanges, BiocGenerics(>= 0.15.3), data.table, stringr, GenomeInfoDb, ggplot2, grid, gridExtra, methods, igraph, S4Vectors(>= 0.13.13), dplyr, Gviz, Biobase, graphics, stats, utils, grDevices
Suggests knitr, BiocStyle, testthat
Depends On Me
Imports Me
Suggests Me Chicago, ELMER, sevenC
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Follow Installation instructions to use this package in your R session.

Source Package GenomicInteractions_1.15.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan) GenomicInteractions_1.15.0.tgz
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