GenomicDataCommons

DOI: 10.18129/B9.bioc.GenomicDataCommons    

This is the development version of GenomicDataCommons; for the stable release version, see GenomicDataCommons.

NIH / NCI Genomic Data Commons Access

Bioconductor version: Development (3.9)

Programmatically access the NIH / NCI Genomic Data Commons RESTful service.

Author: Martin Morgan [aut], Sean Davis [aut, cre]

Maintainer: Sean Davis <seandavi at gmail.com>

Citation (from within R, enter citation("GenomicDataCommons")):

Installation

To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("GenomicDataCommons", version = "3.9")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GenomicDataCommons")

 

HTML R Script Introduction to Accessing the NCI Genomic Data Commons
PDF   Reference Manual
Text   NEWS

Details

biocViews DataImport, Sequencing, Software
Version 1.7.3
In Bioconductor since BioC 3.5 (R-3.4) (1.5 years)
License Artistic-2.0
Depends R (>= 3.4.0), magrittr
Imports stats, httr, xml2, jsonlite, utils, rlang, readr, GenomicRanges, IRanges, dplyr, rappdirs, SummarizedExperiment, S4Vectors, tibble
LinkingTo
Suggests BiocStyle, knitr, rmarkdown, DT, testthat, listviewer, ggplot2, GenomicAlignments, Rsamtools
SystemRequirements
Enhances
URL https://bioconductor.org/packages/GenomicDataCommons http://github.com/Bioconductor/GenomicDataCommons
BugReports https://github.com/Bioconductor/GenomicDataCommons/issues/new
Depends On Me
Imports Me GDCRNATools, TCGAutils
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GenomicDataCommons_1.7.3.tar.gz
Windows Binary GenomicDataCommons_1.7.3.zip
Mac OS X 10.11 (El Capitan) GenomicDataCommons_1.7.3.tgz
Source Repository git clone https://git.bioconductor.org/packages/GenomicDataCommons
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GenomicDataCommons
Package Short Url http://bioconductor.org/packages/GenomicDataCommons/
Package Downloads Report Download Stats

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