To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("GeneBreak")

In most cases, you don't need to download the package archive at all.

GeneBreak

DOI: 10.18129/B9.bioc.GeneBreak    

This is the development version of GeneBreak; for the stable release version, see GeneBreak.

Gene Break Detection

Bioconductor version: Development (3.7)

Recurrent breakpoint gene detection on copy number aberration profiles.

Author: Evert van den Broek, Stef van Lieshout

Maintainer: Evert van den Broek <vandenbroek.evert at gmail.com>

Citation (from within R, enter citation("GeneBreak")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("GeneBreak")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GeneBreak")

 

PDF R Script GeneBreak
PDF   Reference Manual
Text   NEWS

Details

biocViews CopyNumberVariation, DNASeq, Genetics, Sequencing, Software, Visualization, WholeGenome, aCGH
Version 1.9.0
In Bioconductor since BioC 3.2 (R-3.2) (2 years)
License GPL-2
Depends R (>= 3.2), QDNAseq, CGHcall, CGHbase, GenomicRanges
Imports graphics, methods
LinkingTo
Suggests
SystemRequirements
Enhances
URL https://github.com/stefvanlieshout/GeneBreak
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GeneBreak_1.9.0.tar.gz
Windows Binary GeneBreak_1.9.0.zip
Mac OS X 10.11 (El Capitan) GeneBreak_1.9.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/GeneBreak
Package Short Url http://bioconductor.org/packages/GeneBreak/
Package Downloads Report Download Stats

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