DOI: 10.18129/B9.bioc.GGtools    

This is the development version of GGtools; for the stable release version, see GGtools.

software and data for analyses in genetics of gene expression

Bioconductor version: Development (3.8)

software and data for analyses in genetics of gene expression and/or DNA methylation

Author: VJ Carey <stvjc at>

Maintainer: VJ Carey <stvjc at>

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PDF R Script GGtools: software for eQTL identification
PDF   Reference Manual
Text   NEWS


biocViews GeneExpression, GeneticVariability, Genetics, SNP, Software
Version 5.17.0
In Bioconductor since BioC 1.9 (R-2.4) (11.5 years)
License Artistic-2.0
Depends R (>= 2.14), GGBase(>= 3.19.7), data.table, parallel, Homo.sapiens
Imports methods, utils, stats, BiocGenerics(>= 0.25.1), snpStats, ff, Rsamtools, AnnotationDbi, Biobase, bit, VariantAnnotation, hexbin, rtracklayer, Gviz, stats4, S4Vectors(>= 0.9.25), IRanges, GenomeInfoDb, GenomicRanges(>= 1.29.6), iterators, Biostrings, ROCR, biglm, ggplot2, reshape2
Suggests GGdata, illuminaHumanv1.db, SNPlocs.Hsapiens.dbSNP144.GRCh37, multtest, aod, rmeta
Enhances MatrixEQTL, foreach, doParallel, gwascat
Depends On Me ceu1kg, eQTL
Imports Me ceuhm3, GeneGeneInteR
Suggests Me cgdv17, dsQTL, GGBase, gQTLBase, hmyriB36
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