To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("GA4GHshiny")

In most cases, you don't need to download the package archive at all.

GA4GHshiny

DOI: 10.18129/B9.bioc.GA4GHshiny    

This is the development version of GA4GHshiny; to use it, please install the devel version of Bioconductor.

Shiny application for interacting with GA4GH-based data servers

Bioconductor version: Development (3.6)

GA4GHshiny package provides an easy way to interact with data servers based on Global Alliance for Genomics and Health (GA4GH) genomics API through a Shiny application. It also integrates with Beacon Network.

Author: Welliton Souza [aut, cre], Benilton Carvalho [ctb], Cristiane Rocha [ctb], Elizabeth Borgognoni [ctb]

Maintainer: Welliton Souza <well309 at gmail.com>

Citation (from within R, enter citation("GA4GHshiny")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("GA4GHshiny")

Documentation

HTML R Script GA4GHshiny
PDF   Reference Manual

Details

biocViews GUI, Software
Version 0.99.10
In Bioconductor since BioC 3.6 (R-3.4)
License GPL-3
Depends GA4GHclient
Imports AnnotationDbi, BiocGenerics, dplyr, DT, GenomeInfoDb, openxlsx, GenomicFeatures, methods, purrr, S4Vectors, shiny, shinyjs, tidyr, shinythemes
LinkingTo
Suggests BiocStyle, org.Hs.eg.db, knitr, rmarkdown, testthat, TxDb.Hsapiens.UCSC.hg19.knownGene
SystemRequirements
Enhances
URL https://github.com/labbcb/GA4GHshiny
BugReports https://github.com/labbcb/GA4GHshiny/issues
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GA4GHshiny_0.99.10.tar.gz
Windows Binary GA4GHshiny_0.99.10.zip
Mac OS X 10.11 (El Capitan) GA4GHshiny_0.99.10.tgz
Source Repository git clone https://git.bioconductor.org/packages/GA4GHshiny
Package Short Url http://bioconductor.org/packages/GA4GHshiny/
Package Downloads Report Download Stats

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