To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("FISHalyseR")

In most cases, you don't need to download the package archive at all.

FISHalyseR

 

   

This is the development version of FISHalyseR; for the stable release version, see FISHalyseR.

FISHalyseR a package for automated FISH quantification

Bioconductor version: Development (3.6)

FISHalyseR provides functionality to process and analyse digital cell culture images, in particular to quantify FISH probes within nuclei. Furthermore, it extract the spatial location of each nucleus as well as each probe enabling spatial co-localisation analysis.

Author: Karesh Arunakirinathan <akaresh88 at gmail.com>, Andreas Heindl <andreas.heindl at icr.ac.uk>

Maintainer: Karesh Arunakirinathan <akaresh88 at gmail.com>, Andreas Heindl <andreas.heindl at icr.ac.uk>

Citation (from within R, enter citation("FISHalyseR")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("FISHalyseR")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("FISHalyseR")

 

PDF R Script FISHAlyseR Automated fluorescence in situ hybridisation quantification in R
PDF   Reference Manual
Text   NEWS

Details

biocViews CellBiology, Software
Version 1.11.0
In Bioconductor since BioC 3.1 (R-3.2) (2 years)
License Artistic-2.0
Depends EBImage, abind
Imports
LinkingTo
Suggests knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source FISHalyseR_1.11.0.tar.gz
Windows Binary FISHalyseR_1.11.0.zip
Mac OS X 10.11 (El Capitan) FISHalyseR_1.11.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/FISHalyseR
Package Short Url http://bioconductor.org/packages/FISHalyseR/
Package Downloads Report Download Stats

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