To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("ENCODExplorer")

In most cases, you don't need to download the package archive at all.

ENCODExplorer

 

   

This is the development version of ENCODExplorer; for the stable release version, see ENCODExplorer.

A compilation of ENCODE metadata

Bioconductor version: Development (3.6)

This package allows user to quickly access ENCODE project files metadata and give access to helper functions to query the ENCODE rest api, download ENCODE datasets and save the database in SQLite format.

Author: Charles Joly Beauparlant <charles.joly-beauparlant at crchul.ulaval.ca>, Audrey Lemacon <lemacon.audrey at ulaval.ca>, Louis Gendron <louisg.212 at gmail.com> Astrid-Louise Deschenes, <astrid-louise.deschenes at crchudequebec.ulaval.ca> and Arnaud Droit <arnaud.droit at crchudequebec.ulaval.ca >

Maintainer: Charles Joly Beauparlant <charles.joly-beauparlant at crchul.ulaval.ca>

Citation (from within R, enter citation("ENCODExplorer")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("ENCODExplorer")

Documentation

HTML R Script Data update
HTML R Script Database model
HTML R Script Introduction to ENCODExplorer
PDF   Reference Manual
Text   NEWS

Details

biocViews DataImport, Infrastructure, Software
Version 2.3.0
In Bioconductor since BioC 3.1 (R-3.2) (2 years)
License Artistic-2.0
Depends R (>= 3.3), shiny, DT, shinythemes
Imports tools, jsonlite, parallel, RCurl, tidyr, data.table, dplyr, stringr, stringi
LinkingTo
Suggests RUnit, BiocGenerics, knitr, curl, httr
SystemRequirements
Enhances
URL
BugReports https://github.com/CharlesJB/ENCODExplorer/issues
Depends On Me
Imports Me
Suggests Me TSRchitect
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source ENCODExplorer_2.3.0.tar.gz
Windows Binary ENCODExplorer_2.3.0.zip
Mac OS X 10.11 (El Capitan) ENCODExplorer_2.3.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/ENCODExplorer
Package Short Url http://bioconductor.org/packages/ENCODExplorer/
Package Downloads Report Download Stats

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