DOI: 10.18129/B9.bioc.DropletUtils    

This is the development version of DropletUtils; to use it, please install the devel version of Bioconductor.

Utilities for Handling Single-Cell Droplet Data

Bioconductor version: Development (3.7)

Provides a number of utility functions for handling single-cell (RNA-seq) data from droplet technologies such as 10X Genomics. This includes data loading, identification of cells from empty droplets, removal of barcode-swapped pseudo-cells, and downsampling of the count matrix.

Author: Aaron Lun [aut, cre], Jonathan Griffiths [ctb], Davis McCarthy [ctb]

Maintainer: Aaron Lun <alun at wehi.edu.au>

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HTML R Script Utilities for handling droplet-based single-cell RNA-seq data
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biocViews Coverage, DataImport, GeneExpression, RNASeq, Sequencing, SingleCell, Software, Transcriptomics
Version 0.99.15
License GPL-3
Depends R (>= 3.5), BiocParallel, SingleCellExperiment
Imports S4Vectors, SummarizedExperiment, Matrix, methods, utils, stats, edgeR, Rcpp, rhdf5
LinkingTo Rcpp, beachmat, Rhdf5lib
Suggests testthat, beachmat, knitr, BiocStyle, rmarkdown
SystemRequirements C++11
Depends On Me
Imports Me
Suggests Me scater
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Source Package DropletUtils_0.99.15.tar.gz
Windows Binary DropletUtils_0.99.15.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) DropletUtils_0.99.15.tgz
Source Repository git clone https://git.bioconductor.org/packages/DropletUtils
Package Short Url http://bioconductor.org/packages/DropletUtils/
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