DOI: 10.18129/B9.bioc.Doscheda    

This is the development version of Doscheda; for the stable release version, see Doscheda.

A DownStream Chemo-Proteomics Analysis Pipeline

Bioconductor version: Development (3.7)

Doscheda focuses on quantitative chemoproteomics used to determine protein interaction profiles of small molecules from whole cell or tissue lysates using Mass Spectrometry data. The package provides a shiny application to run the pipeline, several visualisations and a downloadable report of an experiment.

Author: Bruno Contrino, Piero Ricchiuto

Maintainer: Bruno Contrino <br1contrino at>

Citation (from within R, enter citation("Doscheda")):


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biocViews DataImport, MassSpectrometry, Normalization, Preprocessing, Proteomics, QualityControl, Regression, Software
Version 1.1.1
License GPL-3
Depends R (>= 3.4)
Imports methods, drc, stats, httr, jsonlite, reshape2, vsn, affy, limma, stringr, ggplot2, graphics, grDevices, calibrate, corrgram, gridExtra, DT, shiny, shinydashboard, readxl, d3heatmap, prodlim, matrixStats
Suggests BiocStyle, knitr, rmarkdown, testthat
Depends On Me
Imports Me
Suggests Me
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