To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("DeconRNASeq")

In most cases, you don't need to download the package archive at all.

DeconRNASeq

DOI: 10.18129/B9.bioc.DeconRNASeq    

This is the development version of DeconRNASeq; for the stable release version, see DeconRNASeq.

Deconvolution of Heterogeneous Tissue Samples for mRNA-Seq data

Bioconductor version: Development (3.6)

DeconSeq is an R package for deconvolution of heterogeneous tissues based on mRNA-Seq data. It modeled expression levels from heterogeneous cell populations in mRNA-Seq as the weighted average of expression from different constituting cell types and predicted cell type proportions of single expression profiles.

Author: Ting Gong <tinggong at gmail.com> Joseph D. Szustakowski <joseph.szustakowski at novartis.com>

Maintainer: Ting Gong <tinggong at gmail.com>

Citation (from within R, enter citation("DeconRNASeq")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("DeconRNASeq")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DeconRNASeq")

 

PDF R Script DeconRNASeq Demo
PDF   Reference Manual

Details

biocViews DifferentialExpression, Software
Version 1.19.0
In Bioconductor since BioC 2.11 (R-2.15) (5 years)
License GPL-2
Depends R (>= 2.14.0), limSolve, pcaMethods, ggplot2, grid
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package DeconRNASeq_1.19.0.tar.gz
Windows Binary DeconRNASeq_1.19.0.zip
Mac OS X 10.11 (El Capitan) DeconRNASeq_1.19.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/DeconRNASeq
Package Short Url http://bioconductor.org/packages/DeconRNASeq/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: