DOI: 10.18129/B9.bioc.DNABarcodes    

This is the development version of DNABarcodes; for the stable release version, see DNABarcodes.

A tool for creating and analysing DNA barcodes used in Next Generation Sequencing multiplexing experiments

Bioconductor version: Development (3.7)

The package offers a function to create DNA barcode sets capable of correcting insertion, deletion, and substitution errors. Existing barcodes can be analysed regarding their minimal, maximal and average distances between barcodes. Finally, reads that start with a (possibly mutated) barcode can be demultiplexed, i.e., assigned to their original reference barcode.

Author: Tilo Buschmann <tilo.buschmann.ac at gmail.com>

Maintainer: Tilo Buschmann <tilo.buschmann.ac at gmail.com>

Citation (from within R, enter citation("DNABarcodes")):


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HTML R Script DNABarcodes
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biocViews Preprocessing, Sequencing, Software
Version 1.9.0
In Bioconductor since BioC 3.2 (R-3.2) (2.5 years)
License GPL-2
Depends Matrix, parallel
Imports Rcpp (>= 0.11.2), BH
LinkingTo Rcpp, BH
Suggests knitr, BiocStyle, rmarkdown
Depends On Me
Imports Me
Suggests Me
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Source Package DNABarcodes_1.9.0.tar.gz
Windows Binary DNABarcodes_1.9.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) DNABarcodes_1.9.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/DNABarcodes
Package Short Url http://bioconductor.org/packages/DNABarcodes/
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