To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("DNABarcodes")

In most cases, you don't need to download the package archive at all.

DNABarcodes

DOI: 10.18129/B9.bioc.DNABarcodes    

This is the development version of DNABarcodes; for the stable release version, see DNABarcodes.

A tool for creating and analysing DNA barcodes used in Next Generation Sequencing multiplexing experiments

Bioconductor version: Development (3.6)

The package offers a function to create DNA barcode sets capable of correcting insertion, deletion, and substitution errors. Existing barcodes can be analysed regarding their minimal, maximal and average distances between barcodes. Finally, reads that start with a (possibly mutated) barcode can be demultiplexed, i.e., assigned to their original reference barcode.

Author: Tilo Buschmann <tilo.buschmann.ac at gmail.com>

Maintainer: Tilo Buschmann <tilo.buschmann.ac at gmail.com>

Citation (from within R, enter citation("DNABarcodes")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("DNABarcodes")

Documentation

HTML R Script DNABarcodes
PDF   Reference Manual
Text   NEWS

Details

biocViews Preprocessing, Sequencing, Software
Version 1.7.0
In Bioconductor since BioC 3.2 (R-3.2) (2 years)
License GPL-2
Depends Matrix, parallel
Imports Rcpp (>= 0.11.2), BH
LinkingTo Rcpp, BH
Suggests knitr, BiocStyle, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package DNABarcodes_1.7.0.tar.gz
Windows Binary DNABarcodes_1.7.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) DNABarcodes_1.7.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/DNABarcodes
Package Short Url http://bioconductor.org/packages/DNABarcodes/
Package Downloads Report Download Stats

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