DOI: 10.18129/B9.bioc.DEScan2    

This is the development version of DEScan2; to use it, please install the devel version of Bioconductor.

Differential Enrichment Scan 2

Bioconductor version: Development (3.7)

Integrated peak and differential caller, specifically designed for broad epigenomic signals.

Author: Dario Righelli [aut, cre], John Koberstein [aut], Bruce Gomes [aut], Nancy Zhang [aut], Claudia Angelini [aut], Lucia Peixoto [aut], Davide Risso [aut]

Maintainer: Dario Righelli <dario.righelli at>

Citation (from within R, enter citation("DEScan2")):


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biocViews Coverage, Epigenetics, PeakDetection, Sequencing, Software
Version 0.99.9
License Artistic-2.0
Depends R (>= 3.5), GenomicRanges
Imports BiocGenerics, ChIPpeakAnno, data.table, DelayedArray, GenomeInfoDb, GenomicAlignments, glue, IRanges, plyr, Rcpp (>= 0.12.13), rtracklayer, S4Vectors, SummarizedExperiment, tools, utils
LinkingTo Rcpp, RcppArmadillo
Suggests BiocStyle, knitr, rmarkdown, testthat, edgeR, limma, EDASeq, RUVSeq, RColorBrewer, statmod
Depends On Me
Imports Me
Suggests Me
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Source Package DEScan2_0.99.9.tar.gz
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Mac OS X 10.11 (El Capitan) DEScan2_0.99.9.tgz
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