DBChIP

DOI: 10.18129/B9.bioc.DBChIP    

This is the development version of DBChIP; for the stable release version, see DBChIP.

Differential Binding of Transcription Factor with ChIP-seq

Bioconductor version: Development (3.9)

DBChIP detects differentially bound sharp binding sites across multiple conditions, with or without matching control samples.

Author: Kun Liang

Maintainer: Kun Liang <kliang at stat.wisc.edu>

Citation (from within R, enter citation("DBChIP")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("DBChIP", version = "3.9")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DBChIP")

 

PDF R Script DBChIP
PDF   Reference Manual

Details

biocViews ChIPSeq, Genetics, Sequencing, Software, Transcription
Version 1.27.0
In Bioconductor since BioC 2.11 (R-2.15) (6 years)
License GPL (>= 2)
Depends R (>= 2.15.0), edgeR, DESeq
Imports
LinkingTo
Suggests ShortRead, BiocGenerics
SystemRequirements
Enhances
URL
Depends On Me
Imports Me metagene
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package DBChIP_1.27.0.tar.gz
Windows Binary DBChIP_1.27.0.zip
Mac OS X 10.11 (El Capitan) DBChIP_1.27.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/DBChIP
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/DBChIP
Package Short Url http://bioconductor.org/packages/DBChIP/
Package Downloads Report Download Stats

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