DOI: 10.18129/B9.bioc.CytoML    

This is the development version of CytoML; for the stable release version, see CytoML.

GatingML interface for openCyto

Bioconductor version: Development (3.8)

This package is designed to use GatingML2.0 as the standard format to exchange the gated data with other software platform.

Author: Mike Jiang

Maintainer: Mike Jiang <wjiang2 at>

Citation (from within R, enter citation("CytoML")):


To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
BiocManager::install("CytoML", version = "devel")


To view documentation for the version of this package installed in your system, start R and enter:



HTML R Script How to export a GatingSet to GatingML
HTML R Script How to parse gatingML into a GatingSet
PDF   Reference Manual
Text   NEWS


biocViews DataImport, DataRepresentation, FlowCytometry, Software
Version 1.7.9
In Bioconductor since BioC 3.4 (R-3.3) (2 years)
License Artistic-2.0
Imports flowCore(>= 1.43.10), flowWorkspace(>= 3.29.5), openCyto(>= 1.11.3), XML, data.table, flowUtils(>= 1.35.7), jsonlite, RBGL, ncdfFlow, Rgraphviz, Biobase, methods, graph, graphics, utils, base64enc, plyr, grDevices, methods, ggcyto(>= 1.9.3)
Suggests testthat, flowWorkspaceData(>= 2.11.1), knitr, parallel
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

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Follow Installation instructions to use this package in your R session.

Source Package CytoML_1.7.9.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan) CytoML_1.7.9.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
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