To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("CytoML")

In most cases, you don't need to download the package archive at all.

CytoML

 

   

This is the development version of CytoML; for the stable release version, see CytoML.

GatingML interface for openCyto

Bioconductor version: Development (3.6)

This package is designed to use GatingML2.0 as the standard format to exchange the gated data with other software platform.

Author: Mike Jiang

Maintainer: Mike Jiang <wjiang2 at fhcrc.org>

Citation (from within R, enter citation("CytoML")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("CytoML")

Documentation

HTML R Script How to export a GatingSet to GatingML
HTML R Script How to parse gatingML into a GatingSet
PDF   Reference Manual
Text   NEWS

Details

biocViews DataImport, DataRepresentation, FlowCytometry, Software
Version 1.3.0
In Bioconductor since BioC 3.4 (R-3.3) (0.5 years)
License Artistic-2.0
Depends
Imports flowCore, flowWorkspace(>= 3.21.10), openCyto(>= 1.11.3), XML, data.table, flowUtils(>= 1.35.7), jsonlite, RBGL, ncdfFlow, Rgraphviz, Biobase, methods, graph, graphics, utils, base64enc, plyr
LinkingTo Rcpp, flowWorkspace, BH (>= 1.62.0-1)
Suggests testthat, flowWorkspaceData(>= 2.11.1), knitr, ggcyto
SystemRequirements xml2, GNU make, C++11
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source CytoML_1.3.0.tar.gz
Windows Binary CytoML_1.3.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) CytoML_1.3.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/CytoML
Package Short Url http://bioconductor.org/packages/CytoML/
Package Downloads Report Download Stats

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