DOI: 10.18129/B9.bioc.ComplexHeatmap    

This is the development version of ComplexHeatmap; for the stable release version, see ComplexHeatmap.

Making Complex Heatmaps

Bioconductor version: Development (3.7)

Complex heatmaps are efficient to visualize associations between different sources of data sets and reveal potential structures. Here the ComplexHeatmap package provides a highly flexible way to arrange multiple heatmaps and supports self-defined annotation graphics.

Author: Zuguang Gu

Maintainer: Zuguang Gu < at>

Citation (from within R, enter citation("ComplexHeatmap")):


To install this package, start R and enter:

## try http:// if https:// URLs are not supported


HTML R Script 1. Introduction to ComplexHeatmap package
HTML R Script 2. Making a single heatmap
HTML R Script 3. Making a list of Heatmaps
HTML R Script 4. Heatmap Annotations
HTML R Script 5. Heatmap and Annotation Legends
HTML R Script 6. Heatmap Decoration
HTML R Script 7. Interactive with Heatmaps
HTML R Script 8. OncoPrint
HTML R Script 9. More Examples
PDF   Reference Manual
Text   NEWS


biocViews Sequencing, Software, Visualization
Version 1.17.1
In Bioconductor since BioC 3.1 (R-3.2) (3 years)
License GPL (>= 2)
Depends R (>= 3.1.2), methods, grid, graphics, stats, grDevices
Imports circlize (>= 0.4.1), GetoptLong, colorspace, RColorBrewer, GlobalOptions (>= 0.0.10)
Suggests testthat (>= 0.3), knitr, markdown, cluster, MASS, pvclust, dendsort, HilbertCurve, Cairo, png, jpeg, tiff, fastcluster, dendextend (>= 1.0.1)
Depends On Me EnrichedHeatmap, recoup
Imports Me BiocOncoTK, cytofWorkflow, DEComplexDisease, DEGreport, DEP, diffcyt, ELMER, EnrichmentBrowser, fCCAC, ImpulseDE2, LineagePulse, maftools, MWASTools, PathoStat, singleCellTK, TCGAbiolinks, TCGAWorkflow, YAPSA
Suggests Me gtrellis, HilbertCurve
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Source Package ComplexHeatmap_1.17.1.tar.gz
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