To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("ClusterJudge")

In most cases, you don't need to download the package archive at all.

ClusterJudge

 

This is the development version of ClusterJudge; to use it, please install the devel version of Bioconductor.

Judging Quality of Clustering Methods using Mutual Information

Bioconductor version: Development (3.6)

ClusterJudge implements the functions, examples and other software published as an algorithm by Gibbons, FD and Roth FP. The article is called "Judging the Quality of Gene Expression-Based Clustering Methods Using Gene Annotation" and it appeared in Genome Research, vol. 12, pp1574-1581 (2002). See package?ClusterJudge for an overview.

Author: Adrian Pasculescu

Maintainer: Adrian Pasculescu <pasculescu at lunenfeld.ca>

Citation (from within R, enter citation("ClusterJudge")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("ClusterJudge")

Documentation

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Details

biocViews Clustering, GO, GeneExpression, Software, StatisticalMethod
Version 0.99.3
In Bioconductor since BioC 3.6 (R-3.4)
License Artistic-2.0
Depends R (>= 3.4), stats, utils, graphics, infotheo, lattice, latticeExtra, httr, jsonlite
Imports
LinkingTo
Suggests yeastExpData, knitr, rmarkdown, devtools, testthat, biomaRt
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source ClusterJudge_0.99.3.tar.gz
Windows Binary ClusterJudge_0.99.3.zip
Mac OS X 10.11 (El Capitan) ClusterJudge_0.99.3.tgz
Source Repository git clone https://git.bioconductor.org/packages/ClusterJudge
Package Short Url http://bioconductor.org/packages/ClusterJudge/
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