DOI: 10.18129/B9.bioc.ChIC    

This is the development version of ChIC; for the stable release version, see ChIC.

Quality Control Pipeline for ChIP-Seq Data

Bioconductor version: Development (3.8)

Quality control (QC) pipeline for ChIP-seq data using a comprehensive set of QC metrics, including previously proposed metrics as well as novel ones, based on local characteristics of the enrichment profile. The package provides functions to calculate a set of QC metrics, a compendium with reference values and machine learning models to score sample quality.

Author: Carmen Maria Livi

Maintainer: Carmen Maria Livi <carmen.livi at>

Citation (from within R, enter citation("ChIC")):


To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
BiocManager::install("ChIC", version = "devel")


To view documentation for the version of this package installed in your system, start R and enter:



PDF R Script ChIC
PDF   Reference Manual


biocViews ChIPSeq, QualityControl, Software
Version 1.1.06
License GPL-2
Depends spp, R (>= 3.5)
Imports>= 0.99), caTools, methods, GenomicRanges, IRanges, parallel, caret, grDevices, stats, utils, graphics, S4Vectors, BiocGenerics
Depends On Me
Imports Me
Suggests Me
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Follow Installation instructions to use this package in your R session.

Source Package ChIC_1.1.06.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan) ChIC_1.1.06.tgz
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Source Repository (Developer Access) git clone
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