To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("Category")

In most cases, you don't need to download the package archive at all.

Category

DOI: 10.18129/B9.bioc.Category    

This is the development version of Category; for the stable release version, see Category.

Category Analysis

Bioconductor version: Development (3.6)

A collection of tools for performing category (gene set enrichment) analysis.

Author: Robert Gentleman [aut], Seth Falcon [ctb], Deepayan Sarkar [ctb], Robert Castelo [ctb], Bioconductor Package Maintainer [cre]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("Category")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("Category")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Category")

 

PDF R Script Using Categories to Analyze Microarray Data
PDF R Script Using Chromosome Bands as Categories
PDF   Reference Manual
Text   NEWS

Details

biocViews Annotation, GO, GeneSetEnrichment, Pathways, Software
Version 2.43.2
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 12.5 years)
License Artistic-2.0
Depends methods, stats4, BiocGenerics, AnnotationDbi, Biobase, Matrix
Imports utils, stats, graph, RBGL, GSEABase, genefilter, annotate, DBI
LinkingTo
Suggests EBarrays, ALL, Rgraphviz, RColorBrewer, xtable (>= 1.4-6), hgu95av2.db, KEGG.db, SNPchip, geneplotter, limma, lattice, RUnit, org.Sc.sgd.db, GOstats, GO.db
SystemRequirements
Enhances
URL
Depends On Me GOstats, meshr, PCpheno
Imports Me categoryCompare, cellHTS2, eisa, gCMAP, interactiveDisplay, PCpheno, phenoTest, ppiStats, RDAVIDWebService, ReportingTools
Suggests Me BiocCaseStudies, GSEAlm, miRLAB, MmPalateMiRNA, qpgraph, RnBeads
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Category_2.43.2.tar.gz
Windows Binary Category_2.43.2.zip
Mac OS X 10.11 (El Capitan) Category_2.43.2.tgz
Source Repository git clone https://git.bioconductor.org/packages/Category
Package Short Url http://bioconductor.org/packages/Category/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: