To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("CancerSubtypes")

In most cases, you don't need to download the package archive at all.

CancerSubtypes

DOI: 10.18129/B9.bioc.CancerSubtypes    

This is the development version of CancerSubtypes; for the stable release version, see CancerSubtypes.

Cancer subtypes identification, validation and visualization based on multiple genomic data sets

Bioconductor version: Development (3.7)

CancerSubtypes integrates the current common computational biology methods for cancer subtypes identification and provides a standardized framework for cancer subtype analysis based multi-omics data, such as gene expression, miRNA expression, DNA methylation and others.

Author: Taosheng Xu<taosheng.x at gmail.com>, Thuc Le<Thuc.Le at unisa.edu.au>

Maintainer: Taosheng Xu<taosheng.x at gmail.com>

Citation (from within R, enter citation("CancerSubtypes")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("CancerSubtypes")

Documentation

HTML R Script CancerSubtypes
PDF   Reference Manual
Text   NEWS

Details

biocViews Clustering, GeneExpression, Software, Visualization
Version 1.5.0
In Bioconductor since BioC 3.4 (R-3.3) (1 year)
License GPL (>= 2)
Depends R (>= 3.4), sigclust, NMF
Imports SNFtool, iCluster, cluster, impute, limma, ConsensusClusterPlus, grDevices, survival
LinkingTo
Suggests BiocGenerics, RUnit, knitr, RTCGA.mRNA, RTCGA.clinical
SystemRequirements
Enhances
URL https://github.com/taoshengxu/CancerSubtypes
BugReports https://github.com/taoshengxu/CancerSubtypes/issues
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CancerSubtypes_1.5.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan) CancerSubtypes_1.5.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/CancerSubtypes
Package Short Url http://bioconductor.org/packages/CancerSubtypes/
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