To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("CNPBayes")

In most cases, you don't need to download the package archive at all.

CNPBayes

 

This is the development version of CNPBayes; for the stable release version, see CNPBayes.

Bayesian mixture models for copy number polymorphisms

Bioconductor version: Development (3.6)

Bayesian hierarchical mixture models for batch effects and copy number.

Author: Stephen Cristiano, Robert Scharpf, and Jacob Carey

Maintainer: Jacob Carey <jcarey15 at jhu.edu>

Citation (from within R, enter citation("CNPBayes")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("http://bioc.ism.ac.jp/biocLite.R")
biocLite("CNPBayes")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CNPBayes")

 

PDF R Script Identifying Copy Number Polymorphisms
PDF R Script Implementation of Bayesian mixture models for copy number estimation
PDF R Script Overview of CNPBayes package
PDF R Script Overview of CNPBayes package
PDF   Reference Manual

Details

biocViews Bayesian, CopyNumberVariation, Software
Version 1.7.1
In Bioconductor since BioC 3.2 (R-3.2) (2 years)
License Artistic-2.0
Depends GenomicRanges
Imports Rcpp (>= 0.12.1), S4Vectors(>= 0.9.25), matrixStats, RColorBrewer, gtools, combinat, IRanges, GenomeInfoDb, GenomicRanges, methods, BiocGenerics, graphics, stats, coda, SummarizedExperiment
LinkingTo Rcpp
Suggests testthat, knitr, BiocStyle, VanillaICE(>= 1.31.3), BiocCheck, MASS, oligoClasses, dplyr, tidyr, ggplot2
SystemRequirements
Enhances
URL https://github.com/scristia/CNPBayes
BugReports https://github.com/scristia/CNPBayes/issues
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source CNPBayes_1.7.1.tar.gz
Windows Binary CNPBayes_1.7.1.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) CNPBayes_1.7.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/CNPBayes
Package Short Url http://bioconductor.org/packages/CNPBayes/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: